Stars
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Genomic profiling of biofilm‑associated genes in clinical Staphylococcus aureus from Nigeria: association with multidrug resistance and clonal lineages
Interactive 16-chapter guide to mastering Git, Conda, Pip & Docker for reproducible computational research. From setup to publishing code.
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
Phylotype your strains using Clermont's 2013 method: ezclermont.org
beckley-lab is a computational genomics lab bridging whole-genome sequencing and public health action. We integrate wet lab microbiology for validation and library prep with dry lab pipelines for p…
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
A Tailored Computational Workflow Enabling Rapid, User-Friendly Genotyping and Epidemiological Surveillance of the Enterobacter cloacae Complex
Conda recipes for the bioconda channel.
StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…
bbeckley-hub / mlst
Forked from tseemann/mlst🆔 Scan contig files against PubMLST typing schemes
bbeckley-hub / amr
Forked from ncbi/amrAMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
EnteroMark: A species-optimized computational pipeline for rapid, accessible Enterococcus faecium genotyping and surveillance .Complete VRE genomic analysis in minutes — not hours
Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
A genome simulator for transposable element (TE) variants
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
Built a reproducible R Shiny dashboard that identifies cluster-specific marker genes in single-cell transcriptomics data. Features include automated calculation of gene specificity scores ($diff = …
Welcome to the ESKAPE AMR Platform – a free, open-source web application that integrates seven species-specific genomic analysis pipelines into a single, user-friendly interface.