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IDP-denovo: a tool for de novo transcriptome assembly and isoform annotation by hybrid sequencing.

For the detailed manual, please check manual.pdf
Due to the limit of Github, please download the testing data from https://1drv.ms/u/s!AosaKQU26Piaav1glSWQrI8uhV8?e=MSR39I, and put them under test_data
.

Install IDP-denovo

Under code directory, please run ./install.sh
It installs one of plugins GMAP and compiles codes automatically.
When Installation finishes, under code directory, please run ./run_check.sh
It checks whether plugins can successfully run on your machine before running IDP-denovo.

Run IDP-denovo

To find manual of IDP-denovo, please run ./bin/idpdenovo.py

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IDP-denovo: a tool for de novo transcriptome assembly and isoform annotation by hybrid sequencing.

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